February 22, 2012

Run ImageJ plugins from the command line in Ubuntu

by Oleg Dzhimiev

1. Get X Virtual FrameBuffer
sudo apt-get install xvfb

2. Launch ImageJ (“cd” to the ij.jar directory):
Xvfb :15 &
DISPLAY=:15 java -Xmx12288m -jar ij.jar -run "TestIJ Plugin"

Comments:

  • TestIJ Plugin is the name of the compiled plugin in the ImageJ menu. No need to specify a subfolder.
  • :15 is an example.

Links that helped:

  1. Source 1
  2. Source 2
  3. Source 3

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